Dr. Shawn Murphy, MD

• Neurology

• Clinical Informatics

*Healthgrades does not verify qualifications for medical specialties. Please verify your provider's specialty and qualifications directly with your provider and applicable medical board.

• Massachusetts General Hospital

  Fellowship Hospital, 1996

• Massachusetts General Hospital

  Residency Hospital, 1995

• Beth Israel Deaconess Medical Center

  Internship Hospital, 1992

• University Of Chicago Pritzker School Of Medicine

  Medical School, 1991

• Extracting principal diagnosis, co-morbidity and smoking status for asthma research: evaluation of a natural language processing system, 2006-07-26

• Estimates of SARS-CoV-2 Omicron BA.2 Subvariant Severity in New England Estimates of SARS-CoV-2 Omicron BA.2 Subvariant Severity in New England, 2022-10-25

• Colonoscopy is Associated with a Reduced Risk for Colon Cancer and Mortality in Patients with Inflammatory Bowel Diseases, 2014-07-17

• Similar risk of Depression and Anxiety following surgery or hospitalization for Crohn's disease and Ulcerative colitis, 2013-01-22

• Severity of COVID-19-Related Illness in Massachusetts, July 2021 to December 2022 Severity of COVID-19-Related Illness in Massachusetts, 2023-04-13

• A retrospective cohort analysis leveraging augmented intelligence to characterize long COVID in the electronic health record: A precision medicine framework, 2023-07-25

• Individualized prediction of COVID-19 adverse outcomes with MLHO, 2021-03-05

• International comparisons of laboratory values from the 4CE collaborative to predict COVID-19 mortality, 2022-06-13

• Common genetic variants influence circulating vitamin D levels in inflammatory bowel diseases, 2015-06-19

• Cloud Services for Patient Cohort Identification Using the Informatics for Integrating Biology and the Bedside Platform, 2020-07-07

• SurvMaximin: Robust federated approach to transporting survival risk prediction models, 2022-08-23

• Mode of child-birth and long-term outcomes in women with inflammatory bowel diseases, 2014-09-12

• Limbic system white matter microstructure and long-term treatment outcome in major depressive disorder: A diffusion tensor imaging study using legacy data, 2012-04-30

• Prenatal antidepressant exposure is associated with risk for attention deficit-hyperactivity disorder but not autism spectrum disorder in a large health system, 2014-08-26

• Probabilistic record linkage of de-identified research datasets with discrepancies using diagnosis codes, 2019-01-08

• Comparative effectiveness of infliximab and adalimumab in Crohn's disease and ulcerative colitis, 2016-02-02

• Longitudinal validation of an electronic health record delirium prediction model applied at admission in COVID-19 patients, 2021-11-02

• High-throughput phenotyping with electronic medical record data using a common semi-supervised approach (PheCAP), 2019-11-20

• International electronic health record-derived COVID-19 clinical course profiles: the 4CE consortium, 2020-08-19

• Predicting COVID-19 mortality with electronic medical records, 2021-02-04

• Morphological variables associated with ruptured basilar tip aneurysms, 2021-01-28

• An Electronic Health Records Study of Long-term Weight Gain Following Antidepressant Use, 2023-02-22

• Brain Extraction in Pediatric ADC Maps, toward Characterizing Neuro-Development in Multi-Platform and Multi-Institution Clinical Images, 2015-08-07

• Modeling Disease Severity in Multiple Sclerosis Using Electronic Health Records, 2013-11-11

• International electronic health record-derived post-acute sequelae profiles of COVID-19 patients, 2022-06-29

• Normalization of Plasma 25-hydroxy Vitamin D is Associated with Reduced Risk of Surgery in Crohn's Disease, 2013-03-26

• Vascular geometry associated with anterior communicating artery aneurysm formation, 2020-12-09

• Semi-supervised Encoding for Outlier Detection in Clinical Observation Data, 2019-01-12

• Mortality and Extraintestinal cancers in patients with Primary sclerosing cholangitis and inflammatory bowel disease, 2014-02-19

• Surrounding vascular geometry associated with basilar tip aneurysm formation, 2020-10-21

• Implementation of informatics for integrating biology and the bedside (i2b2) platform as Docker containers, 2018-07-16

• Use of automatic SQL generation interface to enhance transparency and validity of health-data analysis, 2022-06-25

• The association between low density lipoprotein (LDL) and RA genetic factors with LDL levels in rheumatoid arthritis and non-RA controls, 2013-05-28

• Psychiatric co-morbidity is Associated with Increased risk of Surgery in Crohn's disease, 2013-01-07

• High Throughput Tools to Access Images from Clinical Archives for Research, 2014-10-15

• Using Clinically-acquired MRI to Construct Age-Specific ADC Atlases: Quantifying Spatiotemporal ADC Changes from Birth to 6 Years Old, 2017-03-31

• Tobacco use and age are associated with different morphologic features of anterior communicating artery aneurysms, 2021-02-26

• Serum Inflammatory Markers and Risk of Colorectal Cancer in Patients with Inflammatory Bowel Diseases, 2014-01-07

• International Analysis of Electronic Health Records of Children and Youth Hospitalized With COVID-19 Infection in 6 Countries Analysis of Electronic Health Records of Children and Youth Hospitalized With COVID-19, 2021-06-11

• Distribution of agitation and related symptoms among hospitalized patients using a scalable natural language processing method, 2020-11-10

• Transitive Sequencing Medical Records for Mining Predictive and Interpretable Temporal Representations, 2020-06-18

• Feasibility of studying brain morphology in major depressive disorder with structural magnetic resonance imaging and clinical data from the electronic medical record: A pilot study, 2012-11-11

• Combining clinical and genomics queries using i2b2 - Three methods, 2017-04-07

• Evolving phenotypes of non-hospitalized patients that indicate long COVID, 2021-09-27

• Multi-channel Attention-Fusion Neural Network for Brain Age Estimation: Accuracy, Generality, and Interpretation with 16,705 Healthy MRIs across Lifespan, 2021-04-30

• Voxelwise and Regional Brain Apparent Diffusion Coefficient Changes on MRI from Birth to 6 Years of Age, 2020-12-08

• Identifying patients with high data completeness to improve validity of comparative effectiveness research in electronic health records data, 2017-10-10

• Identification of subjects with polycystic ovary syndrome using electronic health records, 2015-10-29

• Statin use is Associated With Reduced Risk of Colorectal Cancer in Patients with Inflammatory Bowel Diseases, 2016-02-22

• The Biobank Portal for Partners Personalized Medicine: A Query Tool for Working with Consented Biobank Samples, Genotypes, and Phenotypes Using i2b2, 2016-02-26

• Automating Installation of the Integrating Biology and the Bedside (i2b2) Platform, 2018-06-04

• Thromboprophylaxis is associated with reduced post-hospitalization venous thromboembolic events in patients with inflammatory bowel diseases, 2014-03-12

• Informatics can help providers incorporate context into care, 2018-06-22

• Rationale and design of a navigator-driven remote optimization of guideline-directed medical therapy in patients with heart failure with reduced ejection fraction, 2019-11-14

• The association between arthralgias and vedolizumab using natural language processing, 2018-09-15

• Polar labeling: silver standard algorithm for training disease classifiers, 2020-02-12

• Improving Case Definition of Crohn's Disease and Ulcerative Colitis in Electronic Medical Records Using Natural Language Processing: A Novel Informatics Approach, 2013-03-14

• Correction to: Association between inflammation and systolic blood pressure in RA compared to patients without RA, 2019-07-08

• Evaluation of Matched Control Algorithms in EHR-based Phenotyping Studies: A Case Study of Inflammatory Bowel Disease Comorbidities, 2014-09-06

• Diabetes and risk of infections with immunomodulator therapy in inflammatory bowel diseases, 2015-04-13

• International Comparisons of Harmonized Laboratory Value Trajectories to Predict Severe COVID-19: Leveraging the 4CE Collaborative Across 342 Hospitals and 6 Countries: A Retrospective Cohort Study, 2021-02-05

• Methods to Develop an Electronic Medical Record Phenotype Algorithm to Compare the Risk of Coronary Artery Disease across 3 Chronic Disease Cohorts, 2015-08-24

• Out-of-system care and recording of patient characteristics critical for comparative effectiveness research, 2017-12-22

• SHRINE: Enabling Nationally Scalable Multi-Site Disease Studies, 2013-03-07

• Extraction of Ejection Fraction from Echocardiography Notes for Constructing a Cohort of Patients having Heart Failure with reduced Ejection Fraction (HFrEF), 2018-09-25

• A clustering approach for detecting implausible observation values in electronic health records data, 2019-07-23

• Age and morphology of posterior communicating artery aneurysms, 2020-07-14

• Validation of Electronic Health Record Phenotyping of Bipolar Disorder and Controls, 2014-12-12

• Association Between Reduced Plasma 25-hydroxy Vitamin D and Increased Risk of Cancer in Patients with Inflammatory Bowel Diseases, 2013-10-23

• Identification of non-response to treatment using narrative data in an electronic health record inflammatory bowel disease cohort, 2016-02-24

• Higher plasma 25(OH)D is associated with reduced risk ofClostridium difficileinfection in patients with inflammatory bowel diseases, 2014-03-18

• Genetic validation of bipolar disorder identified by automated phenotyping using electronic health records, 2018-04-18

• A Computable Phenotype Improves Cohort Ascertainment in a Pediatric Pulmonary Hypertension Registry, 2017-06-16

• Under-specification as the source of ambiguity and vagueness in narrative phenotype algorithm definitions, 2022-01-28

• Mining multi-site clinical data to develop machine learning MRI biomarkers: application to neonatal hypoxic ischemic encephalopathy, 2019-11-21

• Association between inflammation and systolic blood pressure in RA compared to patients without RA, 2018-06-01

• BRAIN AGE ESTIMATION USING LSTM ON CHILDREN'S BRAIN MRI, 2020-05-22

• Data model harmonization for the All Of Us Research Program: Transforming i2b2 data into the OMOP common data model, 2019-02-19

• A numerical similarity approach for using retired Current Procedural Terminology (CPT) codes for electronic phenotyping in the Scalable Collaborative Infrastructure for a Learning Health System (SCILHS), 2015-12-11

• Characterization of long COVID temporal sub-phenotypes by distributed representation learning from electronic health record data: a cohort study, 2023-09-14

• Longitudinal data discontinuity in electronic health records and consequences for medication effectiveness studies, 2021-09-20